Tag Archives: Kaggle

NCFM on Azure Databricks

This article shows how we can run deep learning model for one image classification task. We take the Kaggle NCFM competition as the playground project.

Data and Preparation

Download the data from  https://www.kaggle.com/c/the-nature-conservancy-fisheries-monitoring/data . Unzip and upload the data file into DBFS or Azure blob storage. This is a typical single-label image classification problem covering 8 classes (7 for fish and 1 for non-fish). Training set is rather small, only 3777 images, extra 1000 for testing. Images are challenging since noise/background dominates in the whole picture. To prepare model training, we will split the labed data into training and validation. Usually, 80% for training and 20% for validation. After the split, there are separate folders: val_train, train_split.

Modeling and Training

Small size of training set may be risk of overfiting during model training. One solution is transfer leaning/fine-tune the weights of pre-trained networks. Pre-trained models trained across multiple GPUs on ImageNet; ConvNet features are more generic in early layers and more original-dataset-specific in later layers; Use a small learning rate to fine-tune; Usually fine-tuning begins with later layers;

Here we use Inception-V3 model with ImageNet Pretrained weights. The pre-trained Inception-v3 model achieves state-of-the-art accuracy for recognizing general objects with 1000 classes, like “Zebra”, “Dalmatian”, and “Dishwasher”. The model extracts general features from input images in the first part and classifies them based on those features in the second part.

import os
from keras.applications.inception_v3 import InceptionV3
from keras.layers import Flatten, Dense, AveragePooling2D
from keras.models import Model
from keras.optimizers import RMSprop, SGD
from keras.callbacks import ModelCheckpoint
from keras.preprocessing.image import ImageDataGenerator

learning_rate = 0.001
img_width = 299
img_height = 299
nbr_train_samples = 3019
nbr_validation_samples = 758
nbr_epochs = 20
batch_size = 32
train_data_dir = '/dbfs/mnt/vpa-raw-data-dev/POC/train_split'
val_data_dir = '/dbfs/mnt/vpa-raw-data-dev/POC/val_split'

FishNames = ['ALB', 'BET', 'DOL', 'LAG', 'NoF', 'OTHER', 'SHARK', 'YFT']

print('Loading InceptionV3 Weights ...')
InceptionV3_notop = InceptionV3(include_top=False, weights='imagenet',
                    input_tensor=None, input_shape=(299, 299, 3))

print('Adding Average Pooling Layer and Softmax Output Layer ...')
output = InceptionV3_notop.get_layer(index = -1).output  # Shape: (8, 8, 2048)
output = AveragePooling2D((8, 8), strides=(8, 8), name='avg_pool')(output)
output = Flatten(name='flatten')(output)
output = Dense(8, activation='softmax', name='predictions')(output)

InceptionV3_model = Model(InceptionV3_notop.input, output)
InceptionV3_model.summary()

optimizer = SGD(lr = learning_rate, momentum = 0.9, decay = 0.0, nesterov = True)
InceptionV3_model.compile(loss='categorical_crossentropy', optimizer = optimizer, metrics = ['accuracy'])

# autosave best Model
best_model_file = "/dbfs/mnt/vpa-raw-data-dev/POC/weights.h5"
best_model = ModelCheckpoint(best_model_file, monitor='val_acc', verbose = 1, save_best_only = True)

In order to improve our ranking, we use data augmentation for testing images.

# this is the augmentation configuration we will use for training
train_datagen = ImageDataGenerator(
        rescale=1./255,
        shear_range=0.1,
        zoom_range=0.1,
        rotation_range=10.,
        width_shift_range=0.1,
        height_shift_range=0.1,
        horizontal_flip=True)

# this is the augmentation configuration we will use for validation, only rescaling
val_datagen = ImageDataGenerator(rescale=1./255)

train_generator = train_datagen.flow_from_directory(
        train_data_dir,
        target_size = (img_width, img_height),
        batch_size = batch_size,
        shuffle = True,
        classes = FishNames,
        class_mode = 'categorical')

validation_generator = val_datagen.flow_from_directory(
        val_data_dir,
        target_size=(img_width, img_height),
        batch_size=batch_size,
        shuffle = True,
        #save_to_dir = '/Users/Sandy/Repo/Kaggle_NCFM/visulization',
        #save_prefix = 'aug',
        classes = FishNames,
        class_mode = 'categorical')

InceptionV3_model.fit_generator(
        train_generator,
        steps_per_epoch = 94,
        nb_epoch = 20,
        validation_data = validation_generator,
        validation_steps = 23,
        callbacks = [best_model])

Prediction

import os
import numpy as np
from keras.preprocessing.image import ImageDataGenerator
from keras.models import load_model

img_width = 299
img_height = 299
batch_size = 32
nbr_test_samples = 1000

FishNames = ['ALB', 'BET', 'DOL', 'LAG', 'NoF', 'OTHER', 'SHARK', 'YFT']

root_path = '/dbfs/mnt/vpa-raw-data-dev/POC/'
weights_path = os.path.join(root_path, 'weights.h5')
print(weights_path)
test_data_dir = os.path.join(root_path, 'test_stg1/')
print(test_data_dir)

test_datagen = ImageDataGenerator(rescale=1./255)
test_generator = test_datagen.flow_from_directory(
        test_data_dir,
        target_size=(img_width, img_height),
        batch_size=batch_size,
        shuffle = False, # Important !!!
        classes = None,
        class_mode = None)

test_image_list = test_generator.filenames

print('Loading model and weights from training process ...')
InceptionV3_model = load_model(weights_path)
print('Begin to predict for testing data ...')
predictions = InceptionV3_model.predict_generator(test_generator, nbr_test_samples)
np.savetxt(os.path.join(root_path, 'predictions.txt'), predictions)

print('Begin to write submission file ..')
f_submit = open(os.path.join(root_path, 'submit.csv'), 'w')
f_submit.write('image,ALB,BET,DOL,LAG,NoF,OTHER,SHARK,YFT\n')
for i, image_name in enumerate(test_image_list):
    pred = ['%.6f' % p for p in predictions[i, :]]
    if i % 100 == 0:
        print('{} / {}'.format(i, nbr_test_samples))
    f_submit.write('%s,%s\n' % (os.path.basename(image_name), ','.join(pred)))
f_submit.close()
print('Submission file successfully generated!')

Practical Tricks

  1. When we use ConvNet for image classification task, while the train samples size is quite small, we can pick a STOA ConvNet architecture, e.g. InceptionV3, ResNet, Inception-ResNet, DenseNet, etc with pre-trained weights on ImageNet to speed up convergence.
  2. Finetune with small learning rate. I have tried learning rate with 0.001 and 0.0001. The smaller learning rate training is quite slow, but gain good validation accuracy.
  3. Use Data augumentation to reduce overfitting.
  4. Split train and local validation.
  5. Ensemble models might help, but I didn’t try yet while I am writing this.

Finally special thanks to pengpaiSH for referencing his code sample. https://github.com/pengpaiSH/Kaggle_NCFM